Under the background of new engineering disciplines, it is necessary to shift from 1.0 version to 2.0 version of moral value education for the higher-level development and standard of engineering majors. University of Shanghai for Science and Technology started with the top-level design within School of Environmental Construction, and developed the engineering ethics to “cultivate morality and train engineers”, and adopted the engineering project methods such as program management professional PgMP and Agile Certified Practitioner ACP. The high-efficient management contributes to systematically constructing the mode 2.0 for moral value education in courses. Integration of moral value education into each engineering professional course is under the established structure, of high quality and high efficiency. This new mode promotes the moral value education and improve quality of engineering professional courses for in-depth promotion in construction of engineering courses in colleges and universities.