Effective implementation strategies of assessing moral education in courses are important to guide the teaching practice. However, the research is far from enough. On the basis of full investigation, this research puts forward three implementation strategies for assessing moral education in course teaching. To be specific, building a “learning effect-oriented, learning -teaching- integrated” evaluation system includes both the teaching and learning evaluation; constructing a “multiple interactive” teaching evaluation model promotes the continuous development of teachers and students; developing evaluation scales for teaching and learning focuses on learning effects, thus inspiring teachers’ and students’ rational reflection and in-depth involvement in the course.